A generic function for plotting of R objects.
plot_bg(df, x_axis = "antigen", bg_MFI = "BG_Median", log_mfi = TRUE)Arguments
- df
A default dataset to use for plot.
- x_axis
The variable on the x axis
- bg_MFI
A numeric
variabledescribing which is the background MFI- log_mfi
a logical value indicating whether the MFI values should be log transformed or not.
Value
A ggplot of background values
Examples
## Not run:
#After extracting the background using \code{\link{extract_bg}}
#we plot the data using
allData_bg <- readr::read_csv(system.file("extdata", "bg_example.csv",
package="protGear"))
#> Rows: 126 Columns: 6
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (2): sampleID, antigen
#> dbl (4): Block, FBG_Median, BG_Median, replicate
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
plot_bg(allData_bg,
x_axis = "antigen",
bg_MFI = "BG_Median", log_mfi = TRUE
)
## End(Not run)