Plot the buffer values

Plot the buffer values

plot_buffer(
  df = buffers,
  buffer_names = "antigen",
  buffer_mfi = "FMedianBG_correct",
  slide_id = ".id"
)

Arguments

df

A data frame to be used to plot

buffer_names

A character string containing the name of the variable with buffer spots. Default set to 'antigen'.

buffer_mfi

A character string containing the name of the variable with MFI value.Assuming background correction is done already. Default to 'FMedianBG_correct'

slide_id

A character string containing the name of the slide/array identifier variable.

Value

plot of buffer spots

Examples

buffers <- readr::read_csv(system.file("extdata", "buffers_sample2.csv",
package="protGear"))
#> Rows: 567 Columns: 7
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (3): sampleID, antigen, .id
#> dbl (4): FMedianBG_correct, Block, Column, Row
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
plot_buffer(df=buffers,buffer_names = "sampleID")