Visualize the slide mimicking the original scan image using a 2d plot.

Visualize the slide mimicking the original scan image using a 2d plot.

visualize_slide_2d(infile, MFI_var, d_f = NA)

Arguments

infile

- a .gpr file to be used to visualize the expression intensities of the slide spots

MFI_var

the MFI variable to plot, can be either the background or foreground value

d_f

a data frame with array data

Value

A 2d plot of either the background or foreground values

Examples

## Not run:
visualize_slide_2d(
infile = system.file("extdata", "/array_data/machine1/KK2-06.txt", 
package="protGear"),
MFI_var = "B635 Median"
)

## End(Not run)